getSignInteractions {UMI4Cats} | R Documentation |
Retrieves all significant interactions from the output of
callInteractions
.
getSignInteractions(gr_interactions)
gr_interactions |
GRangesList outputed by |
GRanges
object with a list of significantly interacting regions.
data("ex_ciita_umi4c") umi <- ex_ciita_umi4c win_frags <- makeWindowFragments(umi, n_frags=8, sliding=1) gr <- callInteractions(umi, ~condition, win_frags, padj_threshold = 0.01, zscore_threshold=2) inter <- getSignInteractions(gr)