statsUMI4C {UMI4Cats} | R Documentation |
Creates a stats summary file and generates a summary plot describing statistics for processed UMI-4C samples.
statsUMI4C(wk_dir)
wk_dir |
Working directory where to save the outputs generated by the UMI-4c analysis. |
Returns a plot summarizing the main statistics of the processed
UMI-4C experiments found in wk_dir
. Also, writes a file named
stats_summary.txt
in wk_dir/logs
that summarizes all the
values represented in the plot.
statsUMI4C(wk_dir = system.file("extdata", "CIITA", package = "UMI4Cats" )) stats <- read.delim(system.file("extdata", "CIITA", "logs", "stats_summary.txt", package = "UMI4Cats" )) head(stats)