hypothesis.add.homologous {TRONCO} | R Documentation |
Add all the hypotheses related to homologou events
hypothesis.add.homologous( x, pattern.cause = "*", pattern.effect = "*", genes = as.genes(x), silent = FALSE )
x |
A TRONCO compliant dataset. |
pattern.cause |
Possibile causes for the pattern. |
pattern.effect |
Possibile effects for the pattern. |
genes |
List of genes to be considered as possible homologous. For these genes, all the types of mutations will be considered functionally equivalent. |
silent |
A parameter to disable/enable verbose messages. |
A TRONCO compliant object with the added hypotheses