deleteMatrixHavingID {TFBSTools} | R Documentation |
The functions to initialize, store matrix or delete matrix in JASPAR database.
## S4 method for signature 'character' deleteMatrixHavingID(x, IDs) ## S4 method for signature 'SQLiteConnection' deleteMatrixHavingID(x, IDs) ## S4 method for signature 'JASPAR2014' deleteMatrixHavingID(x, IDs) ## S4 method for signature 'character,PFMatrixList' storeMatrix(x, pfmList) ## S4 method for signature 'SQLiteConnection,PFMatrixList' storeMatrix(x, pfmList) ## S4 method for signature 'JASPAR2014,PFMatrixList' storeMatrix(x, pfmList) ## S4 method for signature 'character,PFMatrix' storeMatrix(x, pfmList) ## S4 method for signature 'SQLiteConnection,PFMatrix' storeMatrix(x, pfmList) ## S4 method for signature 'JASPAR2014,PFMatrix' storeMatrix(x, pfmList) ## S4 method for signature 'SQLiteConnection' initializeJASPARDB(x, version=c("2014", "2016", "2018", "2020")) ## S4 method for signature 'character' initializeJASPARDB(x, version=c("2014", "2016", "2018", "2020")) ## S4 method for signature 'JASPAR2014' initializeJASPARDB(x, version) ## S4 method for signature 'JASPAR2016' initializeJASPARDB(x, version) ## S4 method for signature 'JASPAR2018' initializeJASPARDB(x, version) ## S4 method for signature 'JASPAR2020' initializeJASPARDB(x, version)
x |
A character vector of length 1 for the path of JASPAR SQLite file,
or a |
IDs |
JASPAR stable IDs. |
pfmList |
The PFMatrixList object, or pfm object. |
version |
Which version of JASPAR to create. So far, it supports 2014, 2016 and 2018. |
If the operation works, a "success" will be returned.
initializeJASPARDB("jaspar.sqlite", version="2014") data("MA0043") storeMatrix("jaspar.sqlite", MA0043) deleteMatrixHavingID("jaspar.sqlite","MA0043.1") file.remove("jaspar.sqlite")