svmClassification {SubCellBarCode} | R Documentation |
Support Vector Machine classifier is trained and used for prediction of protein subcellular localization
svmClassification(markerProteins, protein.data, markerprot.df)
markerProteins |
character; robust marker proteins along with subcellular localization that are present in the given data. |
protein.data |
data.frame; fractionated proteomics data |
markerprot.df |
data.frame; collection of marker proteins along with corresponding subcellular localization |
all.classifications
{ df <- loadData(SubCellBarCode::hcc827Ctrl) c.prots <- calculateCoveredProtein(rownames(df), markerProteins[,1]) set.seed(7) c.prots <- sample(c.prots, 500) cls <- svmClassification(c.prots, df, markerProteins) }