getPreprocessing {STATegRa} | R Documentation |
Generic function to retrieve information about the preprocessing done by omicsCompAnalysis
on a caClass-class
object.
getPreprocessing(x, process=FALSE, preproData=FALSE, block=NULL)
x |
|
process |
Logical indicating whether to return information about the processing done. |
preproData |
Logical indicating whether to return the pre-processed data matrices. |
block |
Character indicating the block of data to be returned. It can be specified by the position of the block ("1" or "2") or the name assigned in the |
If both process
and preproData
are specified, a list containing (otherwise the individual item):
Character indicating the processing done
Matrix (or list of matrices, depending on block
) containing pre-processed data
Patricia Sebastian-Leon
omicsCompAnalysis
, caClass-class
data("STATegRa_S3") B1 <- createOmicsExpressionSet(Data=Block1.PCA, pData=ed.PCA, pDataDescr=c("classname")) B2 <- createOmicsExpressionSet(Data=Block2.PCA, pData=ed.PCA, pDataDescr=c("classname")) # Omics components analysis res <- omicsCompAnalysis(Input=list(B1, B2), Names=c("expr", "mirna"), method="DISCOSCA", Rcommon=2, Rspecific=c(2, 2), center=TRUE, scale=TRUE, weight=TRUE) getPreprocessing(res, process=TRUE) getPreprocessing(res, preproData=TRUE, block="1")