SIMLR_Estimate_Number_of_Clusters {SIMLR} | R Documentation |
estimate the number of clusters by means of two huristics as discussed in the SIMLR paper
SIMLR_Estimate_Number_of_Clusters(X, NUMC = 2:5, cores.ratio = 1)
X |
an (m x n) data matrix of gene expression measurements of individual cells |
NUMC |
vector of number of clusters to be considered |
cores.ratio |
ratio of the number of cores to be used when computing the multi-kernel |
a list of 2 elements: K1 and K2 with an estimation of the best clusters (the lower values the better) as discussed in the original paper of SIMLR
SIMLR_Estimate_Number_of_Clusters(BuettnerFlorian$in_X, NUMC = 2:5, cores.ratio = 0)