slots {SGSeq} | R Documentation |
Accessor and replacement functions for metadata columns.
type(x) <- value txName(x) txName(x) <- value geneName(x) geneName(x) <- value featureID(x) featureID(x) <- value geneID(x) geneID(x) <- value splice5p(x) splice5p(x) <- value splice3p(x) splice3p(x) <- value from(x) <- value to(x) <- value segmentID(x) segmentID(x) <- value variantID(x) variantID(x) <- value eventID(x) eventID(x) <- value closed5p(x) closed5p(x) <- value closed3p(x) closed3p(x) <- value closed5pEvent(x) closed5pEvent(x) <- value closed3pEvent(x) closed3pEvent(x) <- value variantType(x) variantType(x) <- value variantName(x) variantName(x) <- value featureID5p(x) featureID5p(x) <- value featureID3p(x) featureID3p(x) <- value featureID5pEvent(x) featureID5pEvent(x) <- value featureID3pEvent(x) featureID3pEvent(x) <- value ## S4 method for signature 'Features' type(x) ## S4 method for signature 'Paths' type(x) ## S4 method for signature 'Counts' type(x) ## S4 replacement method for signature 'Features' type(x) <- value ## S4 replacement method for signature 'Paths' type(x) <- value ## S4 replacement method for signature 'Counts' type(x) <- value ## S4 method for signature 'Features' txName(x) ## S4 method for signature 'Paths' txName(x) ## S4 method for signature 'Counts' txName(x) ## S4 replacement method for signature 'Features' txName(x) <- value ## S4 replacement method for signature 'Paths' txName(x) <- value ## S4 replacement method for signature 'Counts' txName(x) <- value ## S4 method for signature 'Features' geneName(x) ## S4 method for signature 'Paths' geneName(x) ## S4 method for signature 'Counts' geneName(x) ## S4 replacement method for signature 'Features' geneName(x) <- value ## S4 replacement method for signature 'Paths' geneName(x) <- value ## S4 replacement method for signature 'Counts' geneName(x) <- value ## S4 method for signature 'SGFeatures' featureID(x) ## S4 method for signature 'Paths' featureID(x) ## S4 method for signature 'Counts' featureID(x) ## S4 replacement method for signature 'SGFeatures' featureID(x) <- value ## S4 replacement method for signature 'Paths' featureID(x) <- value ## S4 replacement method for signature 'Counts' featureID(x) <- value ## S4 method for signature 'SGFeatures' geneID(x) ## S4 method for signature 'Paths' geneID(x) ## S4 method for signature 'Counts' geneID(x) ## S4 replacement method for signature 'SGFeatures' geneID(x) <- value ## S4 replacement method for signature 'Paths' geneID(x) <- value ## S4 replacement method for signature 'Counts' geneID(x) <- value ## S4 method for signature 'SGFeatures' splice5p(x) ## S4 method for signature 'SGSegments' splice5p(x) ## S4 method for signature 'SGFeatureCounts' splice5p(x) ## S4 replacement method for signature 'SGFeatures' splice5p(x) <- value ## S4 replacement method for signature 'SGSegments' splice5p(x) <- value ## S4 replacement method for signature 'SGFeatureCounts' splice5p(x) <- value ## S4 method for signature 'SGFeatures' splice3p(x) ## S4 method for signature 'SGSegments' splice3p(x) ## S4 method for signature 'SGFeatureCounts' splice3p(x) ## S4 replacement method for signature 'SGFeatures' splice3p(x) <- value ## S4 replacement method for signature 'SGSegments' splice3p(x) <- value ## S4 replacement method for signature 'SGFeatureCounts' splice3p(x) <- value ## S4 method for signature 'Paths' segmentID(x) ## S4 method for signature 'SGVariantCounts' segmentID(x) ## S4 replacement method for signature 'Paths' segmentID(x) <- value ## S4 replacement method for signature 'SGVariantCounts' segmentID(x) <- value ## S4 method for signature 'Paths' from(x) ## S4 method for signature 'SGVariantCounts' from(x) ## S4 replacement method for signature 'Paths' from(x) <- value ## S4 replacement method for signature 'SGVariantCounts' from(x) <- value ## S4 method for signature 'Paths' to(x) ## S4 method for signature 'SGVariantCounts' to(x) ## S4 replacement method for signature 'Paths' to(x) <- value ## S4 replacement method for signature 'SGVariantCounts' to(x) <- value ## S4 method for signature 'SGVariants' eventID(x) ## S4 method for signature 'SGVariantCounts' eventID(x) ## S4 replacement method for signature 'SGVariants' eventID(x) <- value ## S4 replacement method for signature 'SGVariantCounts' eventID(x) <- value ## S4 method for signature 'SGVariants' variantID(x) ## S4 method for signature 'SGVariantCounts' variantID(x) ## S4 replacement method for signature 'SGVariants' variantID(x) <- value ## S4 replacement method for signature 'SGVariantCounts' variantID(x) <- value ## S4 method for signature 'SGVariants' closed5p(x) ## S4 method for signature 'SGVariantCounts' closed5p(x) ## S4 replacement method for signature 'SGVariants' closed5p(x) <- value ## S4 replacement method for signature 'SGVariantCounts' closed5p(x) <- value ## S4 method for signature 'SGVariants' closed3p(x) ## S4 method for signature 'SGVariantCounts' closed3p(x) ## S4 replacement method for signature 'SGVariants' closed3p(x) <- value ## S4 replacement method for signature 'SGVariantCounts' closed3p(x) <- value ## S4 method for signature 'SGVariants' closed5pEvent(x) ## S4 method for signature 'SGVariantCounts' closed5pEvent(x) ## S4 replacement method for signature 'SGVariants' closed5pEvent(x) <- value ## S4 replacement method for signature 'SGVariantCounts' closed5pEvent(x) <- value ## S4 method for signature 'SGVariants' closed3pEvent(x) ## S4 method for signature 'SGVariantCounts' closed3pEvent(x) ## S4 replacement method for signature 'SGVariants' closed3pEvent(x) <- value ## S4 replacement method for signature 'SGVariantCounts' closed3pEvent(x) <- value ## S4 method for signature 'SGVariants' variantName(x) ## S4 method for signature 'SGVariantCounts' variantName(x) ## S4 replacement method for signature 'SGVariants' variantName(x) <- value ## S4 replacement method for signature 'SGVariantCounts' variantName(x) <- value ## S4 method for signature 'SGVariants' variantType(x) ## S4 method for signature 'SGVariantCounts' variantType(x) ## S4 replacement method for signature 'SGVariants' variantType(x) <- value ## S4 replacement method for signature 'SGVariantCounts' variantType(x) <- value ## S4 method for signature 'SGVariants' featureID5p(x) ## S4 method for signature 'SGVariantCounts' featureID5p(x) ## S4 replacement method for signature 'SGVariants' featureID5p(x) <- value ## S4 replacement method for signature 'SGVariantCounts' featureID5p(x) <- value ## S4 method for signature 'SGVariants' featureID3p(x) ## S4 method for signature 'SGVariantCounts' featureID3p(x) ## S4 replacement method for signature 'SGVariants' featureID3p(x) <- value ## S4 replacement method for signature 'SGVariantCounts' featureID3p(x) <- value ## S4 method for signature 'SGVariants' featureID5pEvent(x) ## S4 method for signature 'SGVariantCounts' featureID5pEvent(x) ## S4 replacement method for signature 'SGVariants' featureID5pEvent(x) <- value ## S4 replacement method for signature 'SGVariantCounts' featureID5pEvent(x) <- value ## S4 method for signature 'SGVariants' featureID3pEvent(x) ## S4 method for signature 'SGVariantCounts' featureID3pEvent(x) ## S4 replacement method for signature 'SGVariants' featureID3pEvent(x) <- value ## S4 replacement method for signature 'SGVariantCounts' featureID3pEvent(x) <- value
x |
Object containing metadata column |
value |
Replacement value |
S4 classes defined in the SGSeq
package contain metadata columns
that store information for each element in the object. For example, class
TxFeatures
contains a column type
that indicates feature
type. The specific columns contained in an object depend on its class.
Content of metadata column for accessor functions or updated object for replacement functions.
Leonard Goldstein
head(type(txf_ann)) head(type(sgf_ann))