rqcCycleBaseCallsCalc {Rqc}R Documentation

Per cycle base calls plot

Description

Creates a bar graph of per cycle base calls.

Usage

rqcCycleBaseCallsCalc(rqcResultSet)

rqcCycleBaseCallsLinePlot(rqcResultSet)

rqcCycleBaseCallsPlot(rqcResultSet)

Arguments

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Value

Plot object from ggplot function.

Functions

Author(s)

Welliton Souza

Examples


checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
}, keep="rqcResultSet")
rqcCycleBaseCallsPlot(rqcResultSet)


[Package Rqc version 1.26.0 Index]