prepareSOFTfileForGEO {RnBeads} | R Documentation |
Starting from an RnBeadSet
object generates a batch submission file for Gene Expression Omnibus series in SOFT format
prepareSOFTfileForGEO( rnb.set, filename, sample.source.col = NULL, sample.description.col = NULL, sample.title.col = NULL, export.cols = seq(ncol(pheno(rnb.set))), rnb.set.raw = NULL, sample.extra.info = NULL, series.info = NULL )
rnb.set |
Object inheriting from class |
filename |
Absolute path or a name of a SOFT file to be generated |
sample.source.col |
|
sample.description.col |
|
sample.title.col |
|
export.cols |
|
rnb.set.raw |
Object inheriting from class |
sample.extra.info |
Optionally, a |
series.info |
A |
The code was largely adapted from a similar function in package lumi
which is due to Pan Du.
TRUE
on success.
Pavlo Lutsik