getTargetFromLolaDb {RnBeads} | R Documentation |
retrieve or guess the target from a LOLA DB object. Here, target typically refers to antibodies for ChIP-seq experiments, but could also refer to other annotations (e.g. motifs in TF motif databases, annotation according to UCSC features etc.)
getTargetFromLolaDb(lolaDb)
lolaDb |
LOLA DB object as returned by |
character vector with targets
Fabian Mueller
# download LOLA DB lolaDest <- tempfile() dir.create(lolaDest) lolaDirs <- downloadLolaDbs(lolaDest, dbs="LOLACore") lolaDb <- loadLolaDbs(lolaDirs[["hg19"]]) getTargetFromLolaDb(lolaDb)