rpa.plot {RPA} | R Documentation |
Plot RPA results and probe-level data for a specified probeset.
rpa.plot(x, set, highlight.probes = NULL, pcol = "darkgrey", mucol = "black", ecol = "red", external.signal = NULL, main = NULL, plots = "all", ...)
x |
Output from rpa.complete function |
set |
probeset |
highlight.probes |
mark probes for highlight |
pcol |
probe color |
mucol |
probeset signal color |
ecol |
external signal color |
external.signal |
external signal to be plotted on top |
main |
title |
plots |
plot type |
... |
other arguments to be passed |
Plots the preprocessed probe-level observations, estimated probeset-level signal, and probe-specific variances. It is also possible to highlight individual probes and external summary measures.
Used for its side-effects. Returns probes x samples matrix of probe-level data plotted on the image.
Leo Lahti leo.lahti@iki.fi
See citation("RPA")
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