getTxdbFeaturesFromGRanges {RCAS}R Documentation

getTxdbFeaturesFromGRanges

Description

This function takes as input a GRanges object that contains GTF file contents (e.g from the output of importGtf function). Then extracts the coordinates of gene features such as promoters, introns, exons, 5'/3' UTRs and whole transcripts.

Usage

getTxdbFeaturesFromGRanges(gffData)

Arguments

gffData

A GRanges object imported by importGtf function

Value

A list of GRanges objects

Examples

data(gff)
txdbFeatures <- getTxdbFeaturesFromGRanges(gffData = gff)


[Package RCAS version 1.18.0 Index]