frequencyPlot {QDNAseq} | R Documentation |
Plot copy number aberration frequencies.
frequencyPlot(x, y, ...)
x |
A |
y |
missing |
... |
... |
Ilari Scheinin
data(LGG150) readCounts <- LGG150 readCountsFiltered <- applyFilters(readCounts) readCountsFiltered <- estimateCorrection(readCountsFiltered) copyNumbers <- correctBins(readCountsFiltered) copyNumbersNormalized <- normalizeBins(copyNumbers) copyNumbersSmooth <- smoothOutlierBins(copyNumbersNormalized) copyNumbersSegmented <- segmentBins(copyNumbersSmooth) copyNumbersSegmented <- normalizeSegmentedBins(copyNumbersSegmented) copyNumbersCalled <- callBins(copyNumbersSegmented) frequencyPlot(copyNumbersCalled)