readAllelicCountsFile {PureCN} | R Documentation |
Read file containing counts of ref and alt alleles of common Toolkit 4.
readAllelicCountsFile(file, format, zero = NULL)
file |
Input file containing counts of ref and alt alleles |
format |
File format. If missing, derived from the file extension. Currently only GATK4 CollectAllelicCounts (tsv) format supported. |
zero |
Start position is 0-based. Default is |
A CollapsedVCF
with the parsed allelic counts.
Markus Riester
ac.file <- system.file("extdata", "example_allelic_counts.tsv", package="PureCN") vcf_ac <- readAllelicCountsFile(ac.file)