podcallScatterplot {PoDCall}R Documentation

podcallScatterplot

Description

Function that make a scatterplot of amplitude values from one channel of a well with threshold indicated by a horizontal line.

Usage

podcallScatterplot(channelData, thr, channel, plotId = NULL)

Arguments

channelData

Amplitude values from one channel of a well.

thr

The threshold set for channel of a well.

channel

The channel the amplitude values belong to.

plotId

A character string with title for the plot

Value

A scatterplot of all droplets from a channel from a well with a line indicating the set threshold.

Examples


# Get path to data
path <- system.file("extdata", "Amplitudes/", package="PoDCall")

# Read in data
data <- importAmplitudeData(path)
data("thrTable")

# Get name of first list element and use as well ID
well_id <- names(data)[1]

# Set channel to plot
channel <- 1

# Get threshold for well_id and channel 1 (see ?thrTable)
thr <- thrTable[well_id, "thr_target"]

scatterplot <- podcallScatterplot(channelData=data[[well_id]][[channel]],
                                thr,
                                channel)


[Package PoDCall version 1.0.0 Index]