runPathoStat {PathoStat} | R Documentation |
Statistical Microbiome Analysis on the pathostat input and generates a html report and produces interactive shiny app plots
runPathoStat(pstat = NULL, report_dir = ".", report_option_binary = "111111111", interactive = TRUE)
pstat |
phyloseq extension pathostat object |
report_dir |
Output report directory path |
report_option_binary |
9 bits Binary String representing the plots to display and hide in the report |
interactive |
when TRUE, opens the interactive shinyApp |
outputfile The output file with all the statistical plots
runPathoStat(interactive = FALSE)