findTaxonomy300 {PathoStat} | R Documentation |
Find the taxonomy for maximum 300 tids
findTaxonomy300(tids)
tids |
Given taxonomy ids |
taxondata Data with the taxonomy information
example_data_dir <- system.file("example/data", package = "PathoStat") pathoreport_file_suffix <- "-sam-report.tsv" datlist <- readPathoscopeData(example_data_dir, pathoreport_file_suffix, input.files.name.vec = as.character(1:6)) dat <- datlist$data ids <- rownames(dat) tids <- unlist(lapply(ids, FUN = grepTid)) # taxonLevels <- findTaxonomy300(tids[1:5])