subnet-methods {PFP} | R Documentation |
Extract or Replace parts of the PFPRefnet.
subnet( object, group_name = NULL, index = NULL, index_type = c("slice", "pathway_id", "pathway_name") ) ## S4 method for signature 'PFPRefnet' subnet( object, group_name = NULL, index = NULL, index_type = c("slice", "pathway_id", "pathway_name") )
object, |
|
group_name, |
character, indicating the groups to subset. |
index, |
NULL or a list contains slice/numeric, character,
specifying elements to extract.
This parameter' length must be the same as |
index_type, |
character, the type pf index, which could be "slice","id","name". |
This function help users to extract the specific networks for customized analysis, which could be of entire group networks or some part of a specific group networks.
Note, the index
argument is only worked while the group_name argument
is consideration, which means group_name is not NULL. And the length
must be the same as group_name
. Default is NULL, indicating
extract the entire group basic networks.
sub the network
data(PFPRefnet_hsa) subnet <- subnet(PFPRefnet_hsa)