sub_PFP-methods {PFP} | R Documentation |
This function extract the subsets of PFP-class.
sub_PFP( object, group_name = NULL, index = NULL, index_type = c("slice", "pathway_id", "pathway_name") ) ## S4 method for signature 'PFP' sub_PFP( object, group_name = NULL, index = NULL, index_type = c("slice", "pathway_id", "pathway_name") )
object, |
|
group_name, |
the group name in kegg |
index, |
the index of pathway, NULL or a list contains slice/numeric,
character, specifying elements to extract.
This parameter' length must be the same as |
index_type, |
the index type,such as "slice","pathway_id","pathway_name" |
This function help users to extract the specific networks PFPscores for customized analysis, which could be of entire group PFP or some part of a specific group PFP.
Note, the index
argument is only worked while the group_name argument
is consideration, which means group_name is not NULL. And the length
must be the same as group_name
. Default is NULL, indicating
extract the entire PFP.
a PFP object contains just the selected elements.
data(PFP_test1) PFP_test1