plotNetworkGraph,NCSModel-method {PDATK}R Documentation

Plot a Network Graph for a Classified NCSModel Object

Description

Visualize metaclusters predicted using network community search on the consensus clustering results for a MultiAssayExperiment of patient cohorts.

Usage

## S4 method for signature 'NCSModel'
plotNetworkGraph(object, ..., palette = "Set1", clusterLabels)

Arguments

object

A classified NCSModel object, as returned by the predictClasses method.

...

Not used, force subsequent arguments to be named.

palette

character A valid pallete for use in RColourBrewer::brewer.pal

clusterLabels

A character vector of names for the metaclusters. Defaults to the cluster number.

Value

A ggplot object containing the network graph, showing the relative edge distances between each cluster in each cohort along with the predicted metacluster label.


[Package PDATK version 1.0.2 Index]