hp_descendants {PCAN} | R Documentation |
HP terms which are descendants of each HP term (including itself) in the Human Phenotype Ontology (http://www.human-phenotype-ontology.org/). Only descendants of 'Phenotypic abnormality' were taken into account.
A named list of 10962 character vectors.
These data are used to examplify the different functions of the package. More data are available in the MultiHumanPhenoDB package.
http://compbio.charite.de/hudson/job/hpo/1529/artifact/hp/hp.obo
########################################### ## Compute information content of each HP according to associated genes data(geneByHp, hp_descendants, package="PCAN") geneByHp <- unstack(geneByHp, entrez~hp) ic <- computeHpIC(geneByHp, hp_descendants) hist( ic, breaks=100, col="grey", main="Distribution of Information Content", xlab="IC base on genes associated to HP" )