OncoSimulWide2Long {OncoSimulR} | R Documentation |
pops.by.time
component of an oncosimul
object into "long" format.
Convert the pops.by.time
component from its "wide" format (with
one column for time, and as many columns as clones/genotypes) into
"long" format, so that it can be used with other functions, for
instance for plots.
OncoSimulWide2Long(x)
x |
An object of class |
A data frame with four columns: Time; Y, the number of cells (the population size); Drivers, a factor with the number of drivers of the given genotype; Genotype, the genotyp.
Ramon Diaz-Uriarte
data(examplesFitnessEffects) sm <- oncoSimulIndiv(examplesFitnessEffects$cbn1, model = "McFL", mu = 5e-7, detectionSize = 1e8, detectionDrivers = 2, sampleEvery = 0.025, keepEvery = 5, initSize = 2000, onlyCancer = FALSE) class(sm) lsm <- OncoSimulWide2Long(sm) head(lsm) summary(lsm)