nichenet_gr_network_pathwaycommons {OmnipathR} | R Documentation |
Builds gene regulation prior knowledge for NicheNet using PathwayCommons.
nichenet_gr_network_pathwaycommons( interaction_types = "controls-expression-of", ... )
interaction_types |
Character vector with PathwayCommons interaction types. Please refer to the default value and the PathwayCommons webpage. |
... |
Ignored. |
Data frame with gene regulatory interactions in NicheNet format.
pc_gr_network <- nichenet_gr_network_pathwaycommons()