nichenet_remove_orphan_ligands {OmnipathR} | R Documentation |
Removes from the expression data the perturbation experiments involving ligands without connections.
nichenet_remove_orphan_ligands(expression, lr_network)
expression |
Expression data as returned by
|
lr_network |
A NicheNet format ligand-recptor network data frame as
produced by |
The same list as 'expression' with certain elements removed.
lr_network <- nichenet_lr_network() expression <- nichenet_expression_data() expression <- nichenet_remove_orphan_ligands(expression, lr_network)