print_path_vs {OmnipathR} | R Documentation |
Prints the interactions in the path in a nice format.
print_path_vs(nodeSeq, G)
nodeSeq |
node sequence |
G |
igraph object (from ptms or interactions) |
Returns 'NULL'.
interactions <- import_omnipath_interactions(resources=c('SignaLink3')) OPI_g <- interaction_graph(interactions = interactions) print_path_vs( igraph::all_shortest_paths( OPI_g, from = 'TYRO3', to = 'STAT3' )$vpath, OPI_g ) enzsub <- import_omnipath_enzsub(resources=c('PhosphoSite', 'SIGNOR')) enzsub_g <- enzsub_graph(enzsub) print_path_vs( igraph::all_shortest_paths( enzsub_g, from = 'SRC', to = 'STAT1' )$res, enzsub_g )