import_post_translational_interactions {OmnipathR} | R Documentation |
Imports the dataset from all post-translational datasets of OmniPath.
import_post_translational_interactions( resources = NULL, organism = 9606, exclude = NULL, references_by_resource = TRUE, ... )
resources |
interactions not reported in these databases are
removed. See |
organism |
Interactions are available for human, mouse and rat. Choose among: 9606 human (default), 10116 rat and 10090 Mouse |
exclude |
Character: datasets or resources to exclude. |
references_by_resource |
if FALSE, removes the resource name prefixes from the references (PubMed IDs); this way the information which reference comes from which resource will be lost and the PubMed IDs will be unique. |
... |
optional additional arguments |
A dataframe containing post-translational interactions
interactions <- import_post_translational_interactions( resources = c('BioGRID') )