tfcensus_download {OmnipathR} | R Documentation |
Vaquerizas et al. published in 2009 a list of transcription factors. This function retrieves Supplementary Table 2 from the article (http://www.nature.com/nrg/journal/v10/n4/index.html).
tfcensus_download()
A data frame (tibble) listing transcription factors.
tfcensus <- tfcensus_download() tfcensus # # A tibble: 1,987 x 7 # Class `Ensembl ID` `IPI ID` `Interpro DBD` `Interpro DNA-b. # <chr> <chr> <chr> <chr> <chr> # 1 a ENSG0000000. IPI0021. NA IPR001289 # 2 a ENSG0000000. IPI0004. IPR000047;IPR. NA # 3 a ENSG0000000. IPI0001. IPR001356;IPR. NA # 4 a ENSG0000000. IPI0029. IPR000910;IPR. NA # 5 a ENSG0000000. IPI0001. IPR007087;IPR. IPR006794 # # . with 1,977 more rows, and 2 more variables: `HGNC symbol` <chr>, # # `Tissue-specificity` <chr>