regnetwork_download {OmnipathR} | R Documentation |
Downloads transcriptional and post-transcriptional regulatory interactions
from the RegNetwork database (http://www.regnetworkweb.org/). The
information about effect signs (stimulation or inhibition), provided by
regnetwork_directions
are included in the result.
regnetwork_download(organism = "human")
organism |
Character: either human or mouse. |
Data frame with interactions.
regn_interactions <- regnetwork_download() regn_interactions # # A tibble: 372,778 x 7 # source_genesymb. source_entrez target_genesymb. target_entrez # <chr> <chr> <chr> <chr> # 1 USF1 7391 S100A6 6277 # 2 USF1 7391 DUSP1 1843 # 3 USF1 7391 C4A 720 # 4 USF1 7391 ABCA1 19 # 5 TP53 7157 TP73 7161 # # . with 372,768 more rows, and 3 more variables: effect <dbl>, # # source_type <chr>, target_type <chr>