nichenet_signaling_network_omnipath {OmnipathR} | R Documentation |
Retrieves network prior knowledge from OmniPath and provides it in
a format suitable for NicheNet.
This method never downloads the 'ligrecextra' dataset because the
ligand-receptor interactions are supposed to come from
nichenet_lr_network_omnipath
.
nichenet_signaling_network_omnipath(min_curation_effort = 0, ...)
min_curation_effort |
Lower threshold for curation effort |
... |
Passed to |
A network data frame (tibble) with signaling interactions suitable for use with NicheNet.
# use interactions with at least 2 evidences (reference or database) op_signaling_network <- nichenet_signaling_network_omnipath( min_curation_effort = 2 )