patternDistri {OVESEG}R Documentation

Probabilities of all upregulation patterns

Description

This function estimates probabilities of all kinds of upregulation patterns among subtypes.

Usage

patternDistri(ppnull)

Arguments

ppnull

a list returned by postProbNull or OVESEGtest.

Details

The probability of each upregulation pattern is calculated by accumulating and normalizing genewise posterior probability of null hypotheses and of alternative hypotheses.

Value

a data frame object containing all possible upregulation patterns and corresponding probabilities.

Examples

data(RocheBT)
ppnull <- postProbNull(RocheBT$y, RocheBT$group, alpha='moderated')
pd<- patternDistri(ppnull)

[Package OVESEG version 1.8.0 Index]