classifyORFsCandidates {ORFhunteR} | R Documentation |
Clussify the pseudo and true ORF candidates.
classifyORFsCandidates( ORFLncRNAs, ORFmRNAs, pLearn = 0.75, nTrees = 500, modelRF = NULL, workDir = NULL, showAccuracy = FALSE )
ORFLncRNAs |
the oject of the class list of non-coding pseudo ORFs. |
ORFmRNAs |
the oject of the class list of coding true ORFs. |
pLearn |
probability threshold for the "traing" class of ORFs. Default value is 0.75. |
nTrees |
nuber of the decision trees in randomForest. Default value is 500. |
modelRF |
character string giving the name of RDS-file to store the classification model. NULL by default. |
workDir |
character string giving the path to and name of work directory. NULL by default that mean the current working directory. |
showAccuracy |
logic TRUE or FALSE. Use TRUE for print accuracy metrics. Default value is FALSE |
The classificator object of the class randomForest.
Mikalai M. Yatskou
## Not run: clt <- classifyORFsCandidates(ORFLncRNAs, ORFmRNAs) ## End(Not run)