plot_grange_heatmap {NanoMethViz} | R Documentation |
Plot GRanges heatmap
plot_grange_heatmap( x, grange, pos_style = c("to_scale", "compact"), window_prop = 0.3 )
x |
the NanoMethResult object. |
grange |
the GRanges object with one entry. |
pos_style |
the style for plotting the base positions along the x-axis. Defaults to "to_scale", plotting (potentially) overlapping squares along the genomic position to scale. The "compact" options plots only the positions with measured modification. |
window_prop |
the size of flanking region to plot. Can be a vector of two values for left and right window size. Values indicate proportion of gene length. |
a ggplot plot containing the heatmap.
nmr <- load_example_nanomethresult() gr <- GenomicRanges::GRanges(data.frame(chr = "chr7", start = 6703892, end = 6730431)) plot_grange_heatmap(nmr, gr[1, ])