MS_reactionNetwork {MetaboSignal} | R Documentation |
This function generates a directed reaction-compound network. The network is formalized as a three-column matrix, where each row represents an edge connecting two nodes (from source to target).
MS_reactionNetwork(metabo_paths)
metabo_paths |
character vector containing the KEGG IDs of the metabolic pathways of interest. See functions "MS_keggFinder( )" and "MS_getPathIds( )". |
A three-column matrix where each row represents an edge between two nodes.
Reaction directionality reported in KEGG has been cross-validated with published literature (Duarte et al., 2007).
reaction_network <- MS_reactionNetwork(metabo_paths = c("rno00010", "rno00562"))