plotUpset {MetaNeighbor} | R Documentation |
Plot Upset plot showing how replicability depends on input dataset.
plotUpset(metaclusters, min_recurrence = 2, outlier_name = "outliers")
metaclusters |
Metaclusters extracted from MetaNeighborUS analysis. |
min_recurrence |
Only show replicability structure for metaclusters that are replicable across at least min_recurrence datasets. |
outlier_name |
In metaclusters, name assigned to outliers (clusters that did not match with any other cluster) |
data(mn_data) var_genes = variableGenes(dat = mn_data, exp_labels = mn_data$study_id) celltype_NV = MetaNeighborUS(var_genes = var_genes, dat = mn_data, study_id = mn_data$study_id, cell_type = mn_data$cell_type, fast_version = TRUE, one_vs_best = TRUE) mclusters = extractMetaClusters(celltype_NV) plotUpset(mclusters)