typeMatch_link0 {MetCirc}R Documentation

Get typeMatch and link0 data frame

Description

'typeMatch_link0' returns a list with accessors '"link0df"' and '"type_match"'

Usage

typeMatch_link0(similarityMatrix, spectra, type, condition)

Arguments

similarityMatrix

'matrix' with pair-wise similarity values

spectra

'MSpectra' object

type

'character', either '"mz"', '"retentionTime"', '"clustering"'

condition

'character', tissue

Details

Helper function for 'shinyCircos'.

Value

'list' of length 2, entry 'link0df' is of 'data.frame' and entry 'type_match' that is a 'character' vector

Author(s)

Thomas Naake, thomasnaake@googlemail.com

Examples

data("spectra", package = "MetCirc")
similarityMat <- compare_Spectra(spectra_tissue[1:10], 
    fun = normalizeddotproduct, binSize = 0.01)
## order according to retention time 
MetCirc:::typeMatch_link0(similarityMatrix = similarityMat, 
    spectra = spectra_tissue, type = "mz", 
    condition = c("SPL", "LIM", "ANT", "STY"))


[Package MetCirc version 1.22.0 Index]