cutLinkDf {MetCirc} | R Documentation |
Create a cut link data frame
cutLinkDf(linkDf, type = c("all", "inter", "intra"))
linkDf |
'data.frame', that gives per each row information on linked features |
type |
'character', one of "all", "inter" or "intra" |
This function is used to truncate features from linkDf. If type = "all", linkDf will not be changed; if type = "inter" the returned linkDf will only contain entries of links which are between groups and not inside groups; contrary to that, if type = "intra" the returned linkDf will only contain entries of links which are inside groups and not between groups.
cutLinkDf returns a data.frame that gives per each row information on linked features
Thomas Naake, thomasnaake@googlemail.com
data("spectra", package = "MetCirc") data("similarityMat", package = "MetCirc") linkDf <- createLinkDf(similarityMatrix = similarityMat, spectra = spectra_tissue, condition = c("SPL", "LIM", "ANT", "STY"), lower = 0.75, upper = 1) cutLinkDf(linkDf = linkDf, type = "all")