getProcessed {MSstats} | R Documentation |
Get feature-level data to be used in the MSstatsSummarizationOutput function
getProcessed(input)
input |
data.table processed by dataProcess subfunctions |
data.table processed by dataProcess subfunctions
raw = DDARawData method = "TMP" cens = "NA" impute = TRUE MSstatsConvert::MSstatsLogsSettings(FALSE) input = MSstatsPrepareForDataProcess(raw, 2, NULL) input = MSstatsNormalize(input, "EQUALIZEMEDIANS") input = MSstatsMergeFractions(input) input = MSstatsHandleMissing(input, "TMP", TRUE, "NA", 0.999) input_all = MSstatsSelectFeatures(input, "all") # all features input_5 = MSstatsSelectFeatures(data.table::copy(input), "topN", top_n = 5) # top 5 features proc1 = getProcessed(input_all) proc2 = getProcessed(input_5) proc1 proc2