.cleanRawMaxQuant {MSstatsConvert} | R Documentation |
Clean raw output from MaxQuant
.cleanRawMaxQuant( msstats_object, protein_id_col, remove_by_site = FALSE, channel_columns = "Reporterintensitycorrected" )
msstats_object |
object that inherits from MSstatsInputFiles class. |
protein_id_col |
character, name of a column with names of proteins. |
remove_by_site |
logical, if TRUE, proteins only identified by site will be removed. |
channel_columns |
character, regular expression that identifies channel columns in TMT data. |
data.table