MSstatsImport {MSstatsConvert} | R Documentation |
Import files from signal processing tools.
MSstatsImport(input_files, type, tool, tool_version = NULL, ...)
input_files |
list of paths to input files or |
type |
chr, "MSstats" or "MSstatsTMT". |
tool |
chr, name of a signal processing tool that generated input files. |
tool_version |
not implemented yet. In the future, this parameter will allow handling different versions of each signal processing tools. |
... |
optional additional parameters to |
an object of class MSstatsInputFiles
.
evidence_path = system.file("tinytest/raw_data/MaxQuant/mq_ev.csv", package = "MSstatsConvert") pg_path = system.file("tinytest/raw_data/MaxQuant/mq_pg.csv", package = "MSstatsConvert") evidence = read.csv(evidence_path) pg = read.csv(pg_path) imported = MSstatsImport(list(evidence = evidence, protein_groups = pg), "MSstats", "MaxQuant") class(imported) head(getInputFile(imported, "evidence"))