msgfParProtocol-class {MSGFplus} | R Documentation |
This class defines a protocol and provides methods to get correct system call parameters.
## S4 method for signature 'msgfParProtocol' show(object) ## S4 method for signature 'msgfParProtocol' length(x) ## S4 method for signature 'msgfParProtocol' getMSGFpar(object) msgfParProtocol(protocol)
object |
An msgfParProtocol object |
x |
An msgfParProtocol object |
protocol |
An integer or string specifying the protocol to use. |
For length() An integer.
For getMSGFpar() A string.
For msgfParProtocol() An msgfParProtocol object.
show
: Short summary of msgfParProtocol object
length
: Report the length of an msgfParProtocol object
getMSGFpar
: Get system
compliant
function call
protocol
An integer specifying a specific protocol type
Other msgfParClasses: msgfPar-class
,
msgfParChargeRange-class
,
msgfParEnzyme-class
,
msgfParFragmentation-class
,
msgfParInstrument-class
,
msgfParIsotopeError-class
,
msgfParLengthRange-class
,
msgfParMatches-class
,
msgfParModification-class
,
msgfParModificationList-class
,
msgfParNtt-class
,
msgfParTda-class
,
msgfParTolerance-class
,
msgfPar
protocol <- msgfParProtocol(0) protocol <- msgfParProtocol('No protocol')