getDataFrame {MOMA} | R Documentation |
Helper function to get data frame for bar plot plot.events function
getDataFrame( data, highlight.genes, genomeBand_2_gene, max.muts = 10, max.cnv = 5 )
data |
data.frame with $type, $id, $Freq per event |
highlight.genes |
genes to look for in mutations/cnv lists (if looking for specific genes because of prior knowledge) |
genomeBand_2_gene |
mapping of genomic location IDs to gene name: vector of HUGO gene ids, named by genomic loci |
max.muts |
maximum number of mutations to get per sample, default is 10 |
max.cnv |
maximum number of cnvs to per sample, default is 5 |
ordered data frame with each genomic event and it's frequency