compPvals {MMDiff2} | R Documentation |
This function determines peak-specific p-values based on distances between sample histograms.
compPvals(MD, dist.method = "MMD", diff.method = "MMD.locfit")
MD |
DBAmmd Object. This Object can be created using |
dist.method |
specify method used for distances between samples. Currently only Maximum Mean Discrepancy (MMD) and Kolmogorov-Smirnov (KS) implemented. (DEFAULT: 'MMD') |
diff.method |
method used to determine p-values and false discovery rates. Currently only 'MMD.locfit' implemented. (DEFAULT: 'MMD.locfit') |
DBAmmd object with updated Contrasts
slot.
DBAmmd
,reportResults
,
plotDists
,compDists
## Example using a small data set provided with this package: data("MMD") MMD.1 <- setContrast(MMD,contrast='byCondition') MMD.1 <- compPvals(MMD.1) reportResults(MMD.1)