summary,GSEATests-method {MAST} | R Documentation |
Returns a data.table
with one row per gene set.
This data.table
contains columns:
name of gene set
Z statistic for continuous component
wald P value
difference in continuous regression coefficients between null and test sets (ie, the numerator of the Z-statistic.)
Z statistic for discrete
wald P value
difference in discrete regression coefficients between null and test sets.
combined discrete and continuous Z statistic using Stouffer's method
combined P value
FDR adjusted combined P value
## S4 method for signature 'GSEATests' summary(object, ...)
object |
A |
... |
passed to |
data.table
gseaAfterBoot
## See the examples in gseaAfterBoot example(gseaAfterBoot)