getOverlappingQTL {MAGAR} | R Documentation |
This function merges the QTLs given and returns the methQTL table in a merged format.
getOverlappingQTL(meth.qtl.list, type = "SNP")
meth.qtl.list |
A list of |
type |
The type of annotation to be overlapped. Needs to be |
A data.frame
with the methQTL interactions and an additional column specifying where the interaction
displayed has been found. This value is generated from the names()
argument of meth.qtl.list
.
Michael Scherer
meth.qtl.res.1 <- loadMethQTLResult(system.file("extdata","MethQTLResult_chr18",package="MAGAR")) meth.qtl.res.2 <- meth.qtl.res.1 res <- getOverlappingQTL(list(A=meth.qtl.res.1,B=meth.qtl.res.2),type="SNP")