accessors {LineagePulse} | R Documentation |
Get internal data of LineagePulse output object.
dfAnnotationProc(objLP) dfResults(objLP) lsMuModelH0(objLP) lsMuModelH1(objLP) lsMuModelConst(objLP) lsMuModelH0_NB(objLP) lsMuModelH1_NB(objLP) lsDispModelH0(objLP) lsDispModelH1(objLP) lsDispModelConst(objLP) lsDispModelH0_NB(objLP) lsDispModelH1_NB(objLP) lsDropModel(objLP) lsFitConvergence(objLP) matCountsProc(objLP) matWeights(objLP) scaDFSplinesDisp(objLP) scaDFSplinesMu(objLP) strReport(objLP) vecAllGenes(objLP) vecConfoundersDisp(objLP) vecConfoundersMu(objLP) scaOmega(objLP) boolFixedPopulations(objLP) vecH0Pop(objLP) vecNormConst(objLP) strVersion(objLP) strReport(objLP)
objLP |
(LineagePulse-Object) A LineagePulse output object to extract from. |
The internal data object specified by the function.
David Sebastian Fischer
lsSimulatedData <- simulateContinuousDataSet( scaNCells = 10, scaNConst = 2, scaNLin = 2, scaNImp = 2, scaMumax = 100, scaSDMuAmplitude = 3, vecNormConstExternal=NULL, vecDispExternal=rep(20, 6), vecGeneWiseDropoutRates = rep(0.1, 6)) objLP <- runLineagePulse( counts = lsSimulatedData$counts, dfAnnotation = lsSimulatedData$annot, strMuModel = "impulse") # get hidden objects within LineagePulse object dfAnnotationProc <- dfAnnotationProc(objLP) dfResults <- dfResults(objLP) lsMuModelH0 <- lsMuModelH0(objLP) lsMuModelH1 <- lsMuModelH1(objLP) lsMuModelConst <- lsMuModelConst(objLP) lsMuModelH0_NB <- lsMuModelH0_NB(objLP) lsMuModelH1_NB <- lsMuModelH1_NB(objLP) lsDispModelH0 <- lsDispModelH0(objLP) lsDispModelH1 <- lsDispModelH1(objLP) lsDispModelConst <- lsDispModelConst(objLP) lsDropModel <- lsDropModel(objLP) lsFitConvergence <- lsFitConvergence(objLP) matCountDataProc <- matCountsProc(objLP) matWeights <- matWeights(objLP) scaDFSplinesDisp <- scaDFSplinesDisp(objLP) scaDFSplinesMu <- scaDFSplinesMu(objLP) strReport <- strReport(objLP) vecAllGenes <- vecAllGenes(objLP) vecConfoundersDisp <- vecConfoundersDisp(objLP) vecConfoundersMu <- vecConfoundersMu(objLP) scaOmega <- scaOmega(objLP) boolFixedPopulations <- boolFixedPopulations(objLP) vecH0Pop <- vecH0Pop(objLP) vecNormConst <- vecNormConst(objLP) strVersion <- strVersion(objLP)