example_LRcell_res {LRcell}R Documentation

An example output of LRcell using data example_gene_pvals and mouse_FC_marker_genes.

Description

An example output of LRcell using data example_gene_pvals and mouse_FC_marker_genes.

Usage

data(example_LRcell_res)

Format

A data frame with 81 rows as mouse FC sub-clusters and 8 variables:

ID

The IDs of each marker genes, can be a cell type or cluster

genes_num

How many marker genes are contributing to the analysis

coef

The coefficients of Logistic Regression or Linear Regression

odds_ratio

The odds ratio quantifies association in Logistic Regression

p.value

The p-value calculated from the analysis

FDR

The FDR after BH correction

lead_genes

Genes that are contributing to the analysis

cell_type

Cell typ ename


[Package LRcell version 1.0.0 Index]