interactivate.DESeqDataSet {InteractiveComplexHeatmap} | R Documentation |
Visualize DESeq2 result in an interactive Shiny app
## S3 method for class 'DESeqDataSet' interactivate(x, res = DESeq2::results(x), seed = 123, ...)
x |
A |
res |
The object returned by |
seed |
Random seed. It is mainly set for the random colors of annotations. |
... |
Other arguments. |
if(interactive()) { require(airway) data(airway) se = airway require(DESeq2) dds = DESeqDataSet(se, design = ~ dex) keep = rowSums(counts(dds)) >= 10 dds = dds[keep, ] dds$dex = relevel(dds$dex, ref = "untrt") dds = DESeq(dds) interactivate(dds) }