get_UTR3CDS {InPAS} | R Documentation |
Get 3' UTRs and their last CDS regions based on CP sites
get_UTR3CDS(sqlite_db, chr.utr3, BPPARAM = NULL)
sqlite_db |
A path to the SQLite database for InPAS, i.e. the output of setup_sqlitedb(). |
chr.utr3 |
An object of GenomicRanges::GRanges, specifying UTR3
GRanges for a chromosome. It must be one element of an output of
|
BPPARAM |
an optional BiocParallel::BiocParallelParam instance determining the parallel back-end to be used during evaluation, or a list of BiocParallelParam instances, to be applied in sequence for nested calls to bplapply. It can be set to NULL or bpparam() |
An object of GenomicRanges::GRanges containing GRanges for UTRs with alternative CP sites and the corresponding last CDSs.
Jianhong Ou, Haibo Liu