get_depthWeight {InPAS}R Documentation

Calculate the depth weight for each sample or each experimental condition

Description

Calculate the depth weight for each sample of non-hugeData or each experimental condition for hugeData: depth/mean(depth)

Usage

get_depthWeight(sqlite_db, hugeData)

Arguments

sqlite_db

A path to the SQLite database for InPAS, i.e. the output of setup_sqlitedb().

hugeData

A logical(1), indicating whether it is huge data

Value

A named numeric vector containing depth weight for each sample for non-hugeData, or depth weight for each condition if hugeData.

Author(s)

Jianhong Ou, Haibo Liu


[Package InPAS version 2.0.0 Index]