get_regionCov {InPAS} | R Documentation |
Get coverage for 3' UTR and last CDS regions on a single chromosome
get_regionCov(chr.utr3, sqlite_db, outdir, BPPARAM = NULL, phmm = FALSE)
chr.utr3 |
one element of an output of |
sqlite_db |
A path to the SQLite database for InPAS, i.e. the output of
|
outdir |
A path to a folder for storing coverage data of 3' UTRs and last CDSs on a given chromosome/scaffold. If it doesn't exist, it will be created. |
BPPARAM |
an optional BiocParallel::BiocParallelParam instance determining the parallel back-end to be used during evaluation, or a list of BiocParallelParam instances, to be applied in sequence for nested calls to bplapply. It can be set to NULL or bpparam() |
phmm |
A logical(1) vector, indicating whether data should be prepared for singleSample analysis? By default, FALSE |
coverage view in GRanges
Jianhong Ou, Haibo Liu