hippo_diffexp {HIPPO} | R Documentation |
HIPPO's differential expression
hippo_diffexp( sce, top.n = 5, switch_to_hgnc = FALSE, ref = NA, k = NA, plottitle = "" )
sce |
SingleCellExperiment object with hippo |
top.n |
number of markers to return |
switch_to_hgnc |
if the current gene names are ensemble ids, and would like to switch to hgnc |
ref |
a data frame with columns 'hgnc' and 'ensg' to match each other, only required when switch_to_hgnc is set to TRUE |
k |
number of rounds of clustering that you'd like to see result. Default is 1 to K |
plottitle |
title of the resulting plot |
list of differential expression result
data(toydata) set.seed(20200321) toydata = hippo(toydata,K = 10,z_threshold = 1,outlier_proportion = 0.01) result = hippo_diffexp(toydata)