readPKCFile {GeomxTools} | R Documentation |
Read a NanoString Probe Kit Configuration (PKC) file.
readPKCFile(file)
file |
A character string containing the path to the PKC file. |
An instance of the DataFrame
class containing columns:
"RTS_ID" |
unique probe ID |
"Gene" |
gene name |
"Module" |
PKC name |
"Negative" |
negative probe |
... |
additional columns |
Zhi Yang & Nicole Ortogero
datadir <- system.file("extdata", "DSP_NGS_Example_Data", package="GeomxTools") pkc <- unzip(zipfile = file.path(datadir, "/pkcs.zip")) PKCData <- readPKCFile(pkc)