setEnrichmentFactors {GOSim} | R Documentation |
Sets the depth and density enrichment factors for the enriched FuSSiMeg GO term similarity measure by Couto et al.
setEnrichmentFactors(alpha = 0.5, beta = 0.5)
alpha |
depth factor |
beta |
density factor |
none
The enrichment factors are stored internally and are used by the
function getTermSim
, if one uses the method
"CoutoEnriched" to calculate GO term similarities
Holger Froehlich
F.Couto,M. Silva, P. Coutinho, Implementation of a Functional Semantic Similarity Measure between Gene-Products, DI/FCUL TR 03-29, Department of Informatics, University of Lisbon, 2003
#\donttest{ setEnrichmentFactors(alpha=0.1,beta=0.5) getTermSim(c("GO:0006955","GO:0007584"),method="CoutoEnriched") #}