dag_funcs {GAPGOM} | R Documentation |
These functions are internal functions and should not be called by the user.
.common_ancestors(go_id1, go_id2, ontology, organism, go_annotation, information_content) .set_edge_weight(sub_graph, information_content) .longest_path(weighted_dag, go_annotation, last_common_ancestor, root, information_content) .get_last_common_ancestors(go1, go2, ontology, organism, root, go_annotation, information_content) .get_short_path_info(go_id, last_common_ancestor, weighted_graph, go_annotation, information_content) .find_disjunctive_lcas(lcas, topoargs) .all_go_similarities(all_go_pairs_df, topoargs, drop = NULL)
Mathematical calculations and navigations functions for directed acyclic graphs (DAG). These functions do a multitude of things; calculate longest paths between two nodes, calculate edge weight and retrieving a common ancestor in the GO DAG given two GO ids.
output is different on a case-to-case basis
Internal functions all used in topo_ic_sim_titj().