makeVCFFromGA4GHResponse {GA4GHclient} | R Documentation |
Convert DataFrame
output from
searchVariants
and getVariant
functions to
VCF
class.
makeVCFFromGA4GHResponse(variants)
variants |
|
VCF
object.
searchVariants
, getVariant
,
VCF
, DataFrame
host <- "http://1kgenomes.ga4gh.org/" ## Not run: datasetId <- searchDatasets(host, nrows = 1)$id variantSetId <- searchVariantSets(host, datasetId, nrows = 1)$id variants <- searchVariants(host, variantSetId, referenceName = "1", start = 15000, end = 16000) variants makeVCFFromGA4GHResponse(variants) ## End(Not run)