getVariant {GA4GHclient} | R Documentation |
Get a variant by its ID with all call sets for this variant.
getVariant(host, variantId, asVCF = TRUE)
host |
URL of GA4GH API data server. |
variantId |
The ID of the Variant to be retrieved. |
asVCF |
If |
This function requests GET host/variants/variantId
.
VCF
object (when asVCF = TRUE
) or
DataFrame
object (otherwise).
DataFrame
, searchVariants
,
searchVariantsByGRanges
, VCF
,
makeVCFFromGA4GHResponse
host <- "http://1kgenomes.ga4gh.org/" ## Not run: datasetId <- searchDatasets(host, nrows = 1)$id variantSetId <- searchVariantSets(host, datasetId, nrows = 1)$id variantId <- searchVariants(host, variantSetId, "1", 15031, 15031)$id getVariant(host, variantId) getVariant(host, variantId, asVCF = FALSE) ## End(Not run)