MetaclusterMFIs {FlowSOM} | R Documentation |
Compute the median fluorescence intensities for the metaclusters
MetaclusterMFIs(fsom)
fsom |
Result of calling the FlowSOM function |
Metacluster MFIs
fileName <- system.file("extdata", "68983.fcs", package="FlowSOM") ff <- flowCore::read.FCS(fileName) ff <- flowCore::compensate(ff,ff@description$SPILL) ff <- flowCore::transform(ff, flowCore::transformList(colnames(ff@description$SPILL), flowCore::logicleTransform())) flowSOM.res <- FlowSOM(ff,scale=TRUE,colsToUse=c(9,12,14:18),maxMeta=10) mfis <- GetMetaclusterMFIs(flowSOM.res)