GetMetaclusterCVs {FlowSOM} | R Documentation |
Compute the coefficient of variation for the metaclusters
GetMetaclusterCVs(fsom)
fsom |
Result of calling the FlowSOM function |
Metacluster CVs
fileName <- system.file("extdata", "68983.fcs", package = "FlowSOM") ff <- flowCore::read.FCS(fileName) ff <- flowCore::compensate(ff, flowCore::keyword(ff)[["SPILL"]]) ff <- flowCore::transform(ff, flowCore::transformList(colnames(flowCore::keyword(ff)[["SPILL"]]), flowCore::logicleTransform())) flowSOM.res <- FlowSOM(ff, scale = TRUE, colsToUse = c(9, 12, 14:18), nClus = 10) cvs <- GetMetaclusterCVs(flowSOM.res)