GetClusterMFIs {FlowSOM} | R Documentation |
Get MFI values for all clusters
GetClusterMFIs(fsom, colsUsed = FALSE, prettyColnames = FALSE)
fsom |
FlowSOM object as generated by the FlowSOM function or the BuildSOM function |
colsUsed |
logical. Should report only the columns used to build the SOM. Default = FALSE. |
prettyColnames |
logical. Should report pretty column names instead of standard column names. Default = FALSE. |
Matrix with median values for each marker
fileName <- system.file("extdata", "68983.fcs", package = "FlowSOM") flowSOM.res <- FlowSOM(fileName, compensate = TRUE, transform = TRUE, scale = TRUE, colsToUse = c(9, 12, 14:18), nClus = 10) mfis <- GetClusterMFIs(flowSOM.res)