Seurat_Clust {FEAST}R Documentation

Seurat Clustering

Description

Seurat Clustering

Usage

Seurat_Clust(Y, knn = 10, resolution = 0.5, input_markers = NULL)

Arguments

Y

A expression matrix. It is recommended to use the raw count matrix.

knn

of nearest neighbors (knn).

resolution

clustering resolution (0, 1) (default = 0.5).

input_markers

A character vector including the featured genes. If they are not presented, SC3 will take care of this.

Value

the clustering labels and the featured genes. input_markers is a character vector


[Package FEAST version 1.0.0 Index]