SF_Prediction {EventPointer} | R Documentation |
Methodology to predict context-specific splicing factors
SF_Prediction( P_value_PSI, ExS, nSel = 1000, significance = NULL, method = "Fisher" )
P_value_PSI |
A data.frame with the p.values of the experiment. |
ExS |
The ExS matrix biuldt in CreateExSmatrix function. |
nSel |
Top ranked events to be considered as spliced events. |
significance |
Threshold of P.value to consider which events are deferentially spliced. A vector of length equal to the number of contrasts. If null it will consider the nSel top ranked events. |
method |
methodology to apply: "Fisher" for Fisher's exact test (default) or "PoiBin" for Poisson Binomial test. |
The function returs a list. This list has for each contrast a data.frame containing the results of the prediction.