LikefunMulti {EBSeq} | R Documentation |
'LikefunMulti' specifies the Likelihood Function of the NB-Beta Model In Multiple Condition Test.
LikefunMulti(ParamPool, InputPool)
ParamPool |
The parameters that will be estimated in EM. |
InputPool |
The control parameters that will not be estimated in EM. |
The function will return the log-likelihood.
Ning Leng
Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)
#x1 = c(.6,.7,.3) #Input = matrix(rnorm(100,100,1),ncol=10) #RIn = matrix(rnorm(100,200,1),ncol=10) #InputPool = list(list(Input[,1:5],Input[,6:10]), # Input, cbind(rep(.1, 10), rep(.9,10)), 1, # RIn, list(RIn[,1:5],RIn[,6:10]), # 10, rbind(c(1,1),c(1,2))) #LikefunMulti(x1, InputPool)