lossOfAbsICDifferences {DiffLogo} | R Documentation |
the change of information content for the given probability vectors
lossOfAbsICDifferences(p1, p2)
p1 |
probability vector representing the first symbol distribution |
p2 |
probability vector representing the second symbol distribution |
an object consisting of height and ylab
Martin Nettling
motif_folder= "extdata/pwm" motif_names = c("HepG2","MCF7","HUVEC","ProgFib") motifs = list() for (name in motif_names) { fileName = paste(motif_folder,"/",name,".pwm",sep="") file = system.file(fileName, package = "DiffLogo") motifs[[name]] = getPwmFromPwmFile(file) } pwm1 = motifs[[motif_names[[1]]]] pwm2 = motifs[[motif_names[[2]]]] diffLogoFromPwm(pwm1 = pwm1, pwm2 = pwm2, stackHeight = lossOfAbsICDifferences)