computeMethylationDataSpatialCorrelation {DMRcaller} | R Documentation |
This function computes the correlation of the methylation levels as a
function of the distances between the Cytosines. The function returns a
vector
with the correlation of methylation levels at distance equal to
a vector
of specified thresholds.
computeMethylationDataSpatialCorrelation(methylationData, regions = NULL, context = "CG", distances = NULL)
methylationData |
the methylation data stored as a |
regions |
a |
context |
the context in which the correlation is computed ( |
distances |
a |
a vector
with the correlation of the methylation levels for
Cytosines located at distances specified in the distances
vector
.
Nicolae Radu Zabet
plotMethylationDataSpatialCorrelation
,
methylationDataList
# load the methylation data data(methylationDataList) # compute spatial correlation in CG context distances <- c(1,5,10,15) correlation_CG_wt <- computeMethylationDataSpatialCorrelation(methylationDataList[["WT"]], context="CG", distances=distances)