calcGeneGSStat {CoGAPS} | R Documentation |
calculates the probability that a gene listed in a gene set behaves like other genes in the set within the given data set
calcGeneGSStat( object, GStoGenes, numPerm, Pw = rep(1, ncol(object@featureLoadings)), nullGenes = FALSE ) ## S4 method for signature 'CogapsResult' calcGeneGSStat( object, GStoGenes, numPerm, Pw = rep(1, ncol(object@featureLoadings)), nullGenes = FALSE )
object |
an object of type CogapsResult |
GStoGenes |
data.frame or list with gene sets |
numPerm |
number of permutations for null |
Pw |
weight on genes |
nullGenes |
logical indicating gene adjustment |
gene similiarity statistic