beds_to_matrix_indexes {ChromSCape} | R Documentation |
Count bed files on interval to create count indexes
beds_to_matrix_indexes(dir, which, BPPARAM = BiocParallel::bpparam())
dir |
A directory containing the single cell BED files |
which |
Genomic Range on which to count |
BPPARAM |
BPPARAM object for multiprocessing. See bpparam for more informations. Will take the default BPPARAM set in your R session. |
A list containing a "feature index" data.frame and a names of cells as vector both used to form the sparse matrix